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Identification of a major qtl rna-seq

Web27 mei 2024 · Plant height is one of the most important agronomical traits in rice (Oryza sativa L.). Introducing the semidwarf rice in the 1960s significantly enhanced the rice yield potential in Asia. Implementing near-isogenic lines (NILs) is the most powerful tool for the identification and fine mapping of quantitative trait loci (QTLs). In this study, 176 NILs … Web1 feb. 2024 · By combining QTL mapping and dynamic RNA-seq, here we identified a candidate gene BnaC09.APT5, which exhibited differential expression pattern between …

Identification of heat-tolerance QTLs and high-temperature stress ...

WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant … WebSimulation study showed that QTL-seq is able to detect QTLs over wide ranges of experimental variables, and the method can be generally applied in population genomics … istaba prayer times https://lovetreedesign.com

Identification of a Major QTL and Candidate Gene …

DNA sequencing may be used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes, or entire genomes of any organism. DNA sequencing is also the most efficient way to indirectly sequence RNA or proteins (via their open reading frames). In fact, DNA sequencing has become a key technology in many areas of biology and other sciences such as medicine, forensics, and anthropology. Web7 mei 2012 · A. RNA-Seq reads shown in the Integrative Genomics Viewer. Blue indicates reads that have a forward orientation relative to the reference genome; red indicates reverse orientation. B. Based on the supporting ESTs and the annotation from the gene models, the gl3 gene contains only a single exon. WebThis study demonstrates how identification of genes underpinning disease-resistance QTL based on differential expression and SNPs can be improved by performing … if there\u0027s grass on the pitch play ball

Long-read proteogenomics to connect disease-associated sQTLs …

Category:Bulked Segregant RNA-seq Reveals Differential Expression and …

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Identification of a major qtl rna-seq

Identification of a Major QTL and Candidate Gene Analysis of Salt ...

Web30 mei 2024 · Request PDF Integrating GWAS, QTL, mapping and RNA-seq to identify candidate genes for seed vigor in rice (Oryza sativa L.) Seed vigor is an important seed quality trait in rice (Oryza sativa ... Web16 apr. 2024 · In summary, the integration of QTL mapping and RNA-Seq analysis assisted us to narrow down the region within the identified QTLs, where the likely underlying candidate genes can be detected. We found …

Identification of a major qtl rna-seq

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Web20 sep. 2024 · The RNA samples of the two bulks and the two parents were sequenced for SNPs identification. Stem rust resistance QTL was validated on chromosome 2U of Ae. umbellulata in the same region in … WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species In this study, ten …

Web23 nov. 2024 · RNA-seq provides useful data to both map loci underpinning important crop traits and dissect the role these genes play within expression of these traits as well as identify novel QTL. Bulk segregant RNA-seq approaches have identified QTL underpinning important agronomic traits such as kernel row number in maize (Liu et al. 2016a, b), pod … Web2 okt. 2024 · The locus qPRL-C06 identified by QTL-seq was repeatedly detected at both an optimal P supply and a low P supply by conventional QTL mapping. This major …

Web21 mrt. 2024 · A major fraction of loci identified by genome-wide association studies (GWASs) lead to alterations in alternative splicing, but interpretation of how such alterations impact proteins is hindered by the technical limitations of short-read RNA-seq, which cannot directly link splicing events to full-length transcript or protein isoforms. Long-read RNA …

Web1 sep. 2024 · We used CIM method to determine the QTLs resistant to SCR in each of the three environments. In total four QTLs were detected, in which one QTL (qSCR1) was located on chromosome 5, two QTLs (qSCR2-1 and qSCR2-2) were located on chromosome 9, and one QTL (qSCR3) was located on chromosome 10 (Table 1).All of …

Web16 apr. 2024 · Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley.pdf Available via license: CC BY Content may be subject to copyright. is taal volcano open for visitorsWeb11 sep. 2024 · Identification of QTLs controlling the heat injury index in tomato using QTL-seq. The heat injury phenotypes in the 200 F 2 plants were found to be significantly different after 48 h of high-temperature stress treatment by observing the growth status of the true leaves and the whole plant. Extremely heat-tolerant strains showed no apparent … if there\\u0027s no bingo in heaven shirtWeb23 mrt. 2024 · Fine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the … ista aquarium light